Exposition and reactivity optimization to predict sites of metabolism in chemicals

Exposition and reactivity optimization to predict sites of metabolism in chemicals

Spring 2013.

Cruciani G, Baroni M, Benedetti P, Goracci L, Fortuna CG

Abstract

Chemical modifications of drugs induced by phase I biotransformations significantly affect their pharmacokinetic properties. Because the metabolites produced can themselves have a pharmacological effect and an intrinsic toxicity, medicinal chemists need to accurately predict the sites of metabolism (SoM) of drugs as early as possible.

However, site of metabolism prediction is rarely accompanied by a prediction of the relative abundance of the various metabolites. Such a prediction would be a great help in the study of drug–drug interactions and in the process of reducing the toxicity of potential drug candidates. The aim of this paper is to present recent developments in the prediction of xenobiotic metabolism and to use concrete examples to explain the computational mechanism employed.

Enrichment procedure based on graphitized carbon black and liquid chromatography-high resolution mass spectrometry for elucidating sulfolipids composition of microalgae

Enrichment procedure based on graphitized carbon black and liquid chromatography-high resolution mass spectrometry for elucidating sulfolipids composition of microalgae

December 2019.

Antonelli M, Benedetti B, Cavaliere C, Cerrato A, La Barbera G, Montone CM, Piovesana S, Laganà A. Talanta

Abstract

Microalgae have recently become a popular functional food due to their health benefits. Sulfolipids, a class of substances abundant in this matrix, have been reported to have interesting bioactivities, such as anti-carcinogenic activity. However, despite the potential interest in sulfolipids, a dedicated analytical method for their characterization is currently lacking but would significantly increase the coverage of sulfolipids with respect to the direct lipidomic analysis.

To achieve this goal, in this work a procedure, based on graphitized carbon black solid phase extraction, was developed for clean-up and enrichment of sulfolipids (sulfoquinovosyldiacylglycerols and sulfoquinovosylmonoacylglycerols) and it was applied to spirulina (Arthrospira platensis) microalgae. A careful study of the solid phase extraction conditions was performed, first to maximize the recovery of reference standards, then to increase the total number of identified sulfolipids from the spirulina lipid extract. All samples were analysed by ultra-high performance liquid chromatography coupled to high resolution mass spectrometry and lipids were tentatively identified by Lipostar, for a reliable lipid structure assignment. The developed method was compared to the direct lipidomic analysis without enrichment, to establish the enrichment efficiency in terms of number of identifications.

From the comparison, the enrichment procedure proved better and allowed the tentative identification of 199 sulfolipids, which is the largest number reported so far for the Arthrospira platensis species. The described method was validated in terms of precision, accuracy, recovery, limit of quantitation and detection for two sulfolipids. Finally, a relative lipid quantitation based on peak area was carried out on the microalgae sample, which indicated nine abundant sulfolipids as representing ca. 60% of sulfolipids in spirulina microalgae. 

Phospholipidome of extra virgin olive oil: Development of a solid phase extraction protocol followed by liquid chromatography-high resolution mass spectrometry for its software-assisted identification

Phospholipidome of extra virgin olive oil: Development of a solid phase extraction protocol followed by liquid chromatography-high resolution mass spectrometry for its software-assisted identification

April 2020.

Antonelli M, Benedetti B, Cavaliere C, Cerrato A, Montone CM, Piovesana S, Lagana A, Capriotti AL.

Abstract

The determination of phospholipids in olive oil is challenging due to their low concentration. For this reason, a comparison of two solid phase extraction procedures, namely weak anionic exchange (WAX) and graphitized carbon black (GCB), is presented for the enrichment of phospholipids. Analyses were performed by liquid chromatography-high resolution mass spectrometry (LC25 HRMS) and lipids were identified by Lipostar software. Compared to the WAX solid phase extraction, GCB demonstrated the best performance and provided 82 identified phospholipids vs only 32.

The final method was validated for some representative phospholipids, showing good repeatability and recovery (63-101%). High sensitivity was reached, with detection limits in the range 9-36 ng g-1, never reported before for phospholipids in olive oil. A semi-quantitative analysis indicated phosphatidic acids and phosphatidylglycerols as the most abundant species, both in number and concentrations. The GCB-LC-HRMS-Lipostar platform can be successfully applied for a comprehensive polar lipidomic characterization of olive oils.

New insights in hemp chemical composition: a comprehensive polar lipidome characterization by combining solid phase enrichment, high-resolution mass spectrometry, and cheminformatics

New insights in hemp chemical composition: a comprehensive polar lipidome characterization by combining solid phase enrichment, high-resolution mass spectrometry, and cheminformatics

January 2020.

Antonelli M, Benedetti B, Cannazza G, Cerrato A, Citti C, Montone CM, Piovesana

Abstract

The chemical composition of Cannabis sativa L. has been extensively investigated for several years; nevertheless, a detailed lipidome characterization is completely lacking in the literature. To achieve this goal, an extraction and enrichment procedure was developed for the characterization of phospholipids and sulfolipids. Firstly, a study on the solid-liquid extraction was performed, to maximize the recovery of the considered lipids; the best procedure consisted of a simple extraction with a mixture of methanol and chloroform (1:1, v/v).

The hemp extracts were analyzed by ultra-high-performance liquid chromatography coupled to high-resolution mass spectrometry and lipids were tentatively identified by Lipostar. To improve the number of identifications, an enrichment method, based on graphitized carbon black solid phase extraction, was evaluated to fractionate phospholipids and sulfolipids into separate eluates. Recovery and matrix effects of the procedure were determined on a mixture of standard lipids, containing representative compounds for each considered lipid class. The optimized method allowed the tentative identification of 189 lipids, including 51 phospholipids and 80 sulfolipids, in the first and second fractions, respectively. The detection of only 6 sulfolipids in the first fraction and 9 phospholipids in the second fraction proved the efficacy of the fractionation method, which also allowed the number of lipid identifications to be increased compared to the same procedure without enrichment, which scored 100 lipids.

Finally, a semi-quantitative analysis permitted the hemp polar lipidome to be characterized. The results of this study allow knowledge of the hemp chemical composition to be improved with a detailed description of its phospho- and sulfolipid profiles. Graphical abstract.

Automation of data analysis in High-Troughput Experimentation using WebChembase server application

Automation of data analysis in High-Troughput Experimentation using WebChembase server application

ESOC 2021. European Symposium on Organic Chemistry. Virtual Mini Symposium. July 2021

Elisabeth Ortega-Carrasco, Jenny Desantis, Stefano Bonciarelli, Laura Goracci, Ismael Zamora

Abstract

High-throughput experimentation is nowadays a well-known technique useful to design large arrays of experiments on microscale, accelerating the exploration of reaction conditions in order to find the most appropriate combination of reaction constituents efficiently.1

General HTE workflows include the use of HPLC and UPLC, frequently with MS detection to generate results quickly. Additional structural information provided by HRMS can be useful to properly identify reaction products.2 However, the large amount of data generated in HTE can be overwhelming if scientists do not have the appropriate software devoted to this task.

In the present work, an automatic workflow covering completely the HRMS processing and analysis steps using WebChembase application server will be shown. The complete workflow starts by processing HRMS data from a local (HRMS computer, scientist laptop, …) or remote (network drive, AWS Bucket, UNIFI server,…) folder using MassChemSite (Molecular Discovery, Ltd) 2 in background. Then, processing results will be loaded into WebChembase server and later automatically analyzed applying the conditions predefined by the user. Final results can be later summarized in a report generated once the experiment data is processed.

You must be logged in to access this content. Not yet registered? Create a new account